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Volume 8; 2020

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Research Paper
Genomic Characteristics of the Toxic Bloom-Forming Cyanobacterium Microcystis aeruginosa NIES-102
Haruyo Yamaguchi, Shigekatsu Suzuki, Yasunori Osana, Masanobu Kawachi
J. Genomics 2020; 8: 1-6. doi:10.7150/jgen.40978
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Paper
Draft genome sequences of Salmonella Oslo isolated from seafood and its laboratory generated auxotrophic mutant
Kadeeja Jazeela, Anirban Chakraborty, Praveen Rai, Ballamoole Krishna Kumar, Shabarinath Srikumar, Scot van Nguyen, Daniel Hurley, Seamus Fanning, Indrani Karunasagar, Vijaya Kumar Deekshit
J. Genomics 2020; 8: 7-10. doi:10.7150/jgen.40059
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Draft Genome Sequence of the Symbiotic Frankia sp. strain B2 isolated from root nodules of Casuarina cunninghamiana found in Algeria
Kathia Belaid, Erik Swanson, Alyssa Carré-Mlouka, Valérie Hocher, Sergio Svistoonoff, Djamel Gully, Stephen Simpson, Krystalynne Morris, W. Kelley Thomas, Said Amrani, Louis S. Tisa, Hassen Gherbi
J. Genomics 2020; 8: 11-15. doi:10.7150/jgen.38461
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Isolation and genomic analysis of 11-aminoundecanoic acid-degrading bacterium Pseudomonas sp. JG-B from nylon 11 enrichment culture
Jocelyn Gatz-Schrupp, Peter Deckard, Benjamin Hufford, Steven Ly, Peter Tupa, Hisako Masuda
J. Genomics 2020; 8: 16-20. doi:10.7150/jgen.42095
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Paper
Draft genome sequence of Deinococcus sp. KR-1, a potential strain for palladium-leaching
Hironaga Akita, Yuya Itoiri, Akio Kumagai, Noriyo Takeda, Akinori Matsushika, Mamoru Oshiki, Zen-ichiro Kimura
J. Genomics 2020; 8: 21-24. doi:10.7150/jgen.42020
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Draft Genome Analysis of Christensenella minuta DSM 22607, exhibiting an unusual expansion of transporter homologs of unknown function
David A Coil, Guillaume Jospin, Jonathan A. Eisen
J. Genomics 2020; 8: 25-29. doi:10.7150/jgen.43162
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Programmable CRISPR interference for gene silencing using Cas13a in mosquitoes
Aditi Kulkarni, Wanqin Yu, Alex Moon, Ashmita Pandey, Kathryn A. Hanley, Jiannong Xu
J. Genomics 2020; 8: 30-36. doi:10.7150/jgen.43928
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Draft Genome Sequences of Bifidobacterium animalis Consecutively Isolated from Healthy Japanese Individuals
Tomoya Tsukimi, Tsubasa Watabe, Kazuki Tanaka, Mitsuhiko P. Sato, Haruo Suzuki, Masaru Tomita, Shinji Fukuda
J. Genomics 2020; 8: 37-42. doi:10.7150/jgen.38516
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
A detailed characteristics of bias associated with long runs of homozygosity identification based on medium density SNP microarrays
Tomasz Szmatoła, Artur Gurgul, Igor Jasielczuk, Weiwei Fu, Katarzyna Ropka-Molik
J. Genomics 2020; 8: 43-48. doi:10.7150/jgen.39147
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Paper
Complete Genome Sequence of Leptospira interrogans Strains FMAS_KW1, FMAS_KW2 and FMAS_AW1 Isolated from Leptospirosis Patients from Karawanalla and Awissawella, Sri Lanka
Indika Seneviratha, Dinesha Jayasundara, Joshua P. Lefler, Kira L. Chaiboonm, Janith Warnasekara, Suneth Agampodi, Michael A. Matthias, Joseph M. Vinetz
J. Genomics 2020; 8: 49-52. doi:10.7150/jgen.43953
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Draft genome sequence of Actinomadura sp. K4S16 and elucidation of the nonthmicin biosynthetic pathway
Hisayuki Komaki, Enjuro Harunari, Natsuko Ichikawa, Akira Hosoyama, Moriyuki Hamada, Kannika Duangmal, Arinthip Thamchaipenet, Yasuhiro Igarashi
J. Genomics 2020; 8: 53-61. doi:10.7150/jgen.44650
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
crispRdesignR: A Versatile Guide RNA Design Package in R for CRISPR/Cas9 Applications
Dylan Beeber, Frédéric JJ Chain
J. Genomics 2020; 8: 62-70. doi:10.7150/jgen.41196
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Complete genome and plasmid sequences of a multidrug-resistant Salmonella enterica subsp. enterica serovar Panama isolate from a German cattle farm
Anne Busch, Helmut Hotzel, Ulrich Methner
J. Genomics 2020; 8: 71-75. doi:10.7150/jgen.48656
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Paper
Draft genome sequence of multi-resistant Salmonella enterica subsp. enterica serovar Rissen strain 19CS0416 isolated from Vietnam reveals mcr-1 plasmid mediated resistance to colistin already in 2013
Belen Gonzalez-Santamarina, Anne Busch, Silvia Garcia-Soto, Mostafa Y. Abdel-Glil, Jörg Linde, Reinhard Fries, Diana Meemken, Helmut Hotzel, Herbert Tomaso
J. Genomics 2020; 8: 76-79. doi:10.7150/jgen.42790
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Nucleotide sequencing of the HoxA gene cluster using Gorilla fosmid clones
Takashi Kitano, Choong-Gon Kim, Naruya Saitou
J. Genomics 2020; 8: 80-83. doi:10.7150/jgen.50468
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Draft Genome Sequences for the Frankia sp. strains CgS1, CcI156 and CgMI4, Nitrogen-Fixing Bacteria Isolated from Casuarina sp. in Egypt
Samira Mansour, Erik Swanson, Céline Pesce, Stephen Simpson, Krystalynne Morris, W. Kelley Thomas, Louis S. Tisa
J. Genomics 2020; 8: 84-88. doi:10.7150/jgen.51181
[Abstract] [Full text] [PDF] [PubMed] [PMC]