Journal of Genomics cover

Journal of Genomics is a peer-reviewed journal publishing papers of high quality in all areas of gene, genetics, genomics, proteomics, metabolomics, DNA/RNA, computational biology, bioinformatics, and other relevant areas of research and application. Types of articles include:

  • Research paper
  • Short research communication
  • Review or mini-review
  • Commentary
  • Database or software paper

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Short Research Paper
Draft genome sequences of Salmonella Oslo isolated from seafood and its laboratory generated auxotrophic mutant
Kadeeja Jazeela, Anirban Chakraborty, Praveen Rai, Krishna Kumar Ballamoole, Shabarinath Srikumar, Scot van Nguyen, Daniel Hurley, Seamus Fanning, Indrani Karunasagar, Vijaya Kumar Deekshit
J. Genomics 2020; 8: 7-10. doi:10.7150/jgen.40059
[Abstract] [Full text] [PDF]


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Research Paper
Genomic Characteristics of the Toxic Bloom-Forming Cyanobacterium Microcystis aeruginosa NIES-102
Haruyo Yamaguchi, Shigekatsu Suzuki, Yasunori Osana, Masanobu Kawachi
J. Genomics 2020; 8: 1-6. doi:10.7150/jgen.40978
[Abstract] [Full text] [PDF]


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Research Paper
Genomic characterization of a pectinolytic isolate of Serratia oryzae isolated from lake water
Nicole Hugouvieux-Cotte-Pattat, Cécile Jacot-des-Combes, Jérôme Briolay
J. Genomics 2019; 7: 64-72. doi:10.7150/jgen.38365
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Paper
Whole Genome Sequence of Marinobacter salarius Strain SMR5, Shown to Promote Growth in its Diatom Host
Mats Töpel, Matthew I.M. Pinder, Oskar N. Johansson, Olga Kourtchenko, Anna Godhe, Adrian K. Clarke
J. Genomics 2019; 7: 60-63. doi:10.7150/jgen.39039
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46
Shigekatsu Suzuki, Haruyo Yamaguchi, Masanobu Kawachi
J. Genomics 2019; 7: 56-59. doi:10.7150/jgen.38149
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Paper
Draft genome sequences for three unisolated Alnus-infective Frankia Sp+ strains, AgTrS, AiOr and AvVan, the first sequenced Frankia strains able to sporulate in-planta
Lorine Bethencourt, Florian Vautrin, Najwa Taib, Audrey Dubost, Lucia Castro-Garcia, Olivier Imbaud, Danis Abrouk, Pascale Fournier, Jérôme Briolay, Agnès Nguyen, Philippe Normand, Maria P. Fernandez, Céline Brochier-Armanet, Aude Herrera-Belaroussi
J. Genomics 2019; 7: 50-55. doi:10.7150/jgen.35875
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Paper
Genome Sequence of Kordia sp. Strain SMS9 Identified in a Non-Axenic Culture of the Diatom Skeletonema marinoi
Matthew I.M. Pinder, Oskar N. Johansson, Alvar Almstedt, Olga Kourtchenko, Adrian K. Clarke, Anna Godhe, Mats Töpel
J. Genomics 2019; 7: 46-49. doi:10.7150/jgen.35061
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Review
Metadata Analysis Approaches for Understanding and Improving the Functional Involvement of Rumen Microbial Consortium in Digestion and Metabolism of Plant Biomass
Ayyappa Kumar Sista Kameshwar, Luiz Pereira Ramos, Wensheng Qin
J. Genomics 2019; 7: 31-45. doi:10.7150/jgen.32164
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
SELfies and CELLfies: Whole Genome Sequencing and Annotation of Five Antibiotic Resistant Bacteria Isolated from the Surfaces of Smartphones, An Inquiry Based Laboratory Exercise in a Genomics Undergraduate Course at the Rochester Institute of Technology
Anutthaman Parthasarathy, Narayan H. Wong, Amanda N. Weiss, Susan Tian, Sara E. Ali, Nicole T. Cavanaugh, Tyler M. Chinsky, Chelsea E. Cramer, Aditya Gupta, Rakshanda Jha, Loryn K. Johnson, Elizabeth D. Tuason, Lauren M. Klafehn, Varada Krishnadas, Ryan J. Musich, Jennifer M. Pfaff, Spencer C. Richman, Alexandria J. Shumway, André O. Hudson
J. Genomics 2019; 7: 26-30. doi:10.7150/jgen.31911
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Complete Genome Sequence of Arthrobacter sp. Strain MN05-02, a UV-Resistant Bacterium from a Manganese Deposit in the Sonoran Desert
Konosuke Mark Ii, Nobuaki Kono, Ivan Glaucio Paulino-Lima, Masaru Tomita, Lynn Justine Rothschild, Kazuharu Arakawa
J. Genomics 2019; 7: 18-25. doi:10.7150/jgen.32194
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Communication
Genome Sequencing and Annotation of Bacillus subtilis UBBS-14 to Ensure Probiotic Safety
Ayesha Sulthana, Suvarna G Lakshmi, Ratna Sudha Madempudi
J. Genomics 2019; 7: 14-17. doi:10.7150/jgen.31170
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Communication
Draft Genome Sequence of the Oleaginous Yeast Apiotrichum porosum (syn. Trichosporon porosum) DSM 27194
Olga Gorte, Habibu Aliyu, Anke Neumann, Katrin Ochsenreither
J. Genomics 2019; 7: 11-13. doi:10.7150/jgen.32210
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Communication
Complete Genome Sequence of Novel Sulfitobacter pseudonitzschiae Strain SMR1, Isolated from a Culture of the Marine Diatom Skeletonema marinoi
Mats Töpel, Matthew I.M. Pinder, Oskar N. Johansson, Olga Kourtchenko, Adrian K. Clarke, Anna Godhe
J. Genomics 2019; 7: 7-10. doi:10.7150/jgen.30559
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Genomic Insights Into A Novel, Alkalitolerant Nitrogen Fixing Bacteria, Azonexus sp. Strain ZS02
Zohier B. Salah, Christopher J. Charles, Paul N. Humphreys, Andrew. P. Laws, Simon P. Rout
J. Genomics 2019; 7: 1-6. doi:10.7150/jgen.28153
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Short Research Paper
De novo male gonad transcriptome draft for the marine mussel Perumytilus purpuratus with a focus on its reproductive-related proteins
Carolina Briones, José J. Nuñez, Montse Pérez, Daniela Espinoza-Rojas, Cristian Molina-Quiroz, Ricardo Guiñez
J. Genomics 2018; 6: 127-132. doi:10.7150/jgen.27864
[Abstract] [Full text] [PDF] [PubMed] [PMC]


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Research Paper
Genomic Analysis of Rhodococcus sp. Br-6, a Bromate Reducing Bacterium Isolated From Soil in Chiba, Japan
Kohei Ito, Masafumi Harada, Nobuyoshi Nakajima, Shigeki Yamamura, Masaru Tomita, Haruo Suzuki, Seigo Amachi
J. Genomics 2018; 6: 122-126. doi:10.7150/jgen.27741
[Abstract] [Full text] [PDF] [PubMed] [PMC]