Draft genome sequencing and assembly of<i> Favolaschia claudopus</i> CIRM-BRFM 2984 isolated from oak limbs

Navarro, David; Drula, Elodie; Chaduli, Delphine; Cazenave, Robert; Ahrendt, Steven; Wang, Jie; Lipzen, Anna; Daum, Chris; Barry, Kerrie; Grigoriev, Igor V.; Favel, Anne; Rosso, Marie-Noëlle; Martin, Francis

doi:10.7150/jgen.92255

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J Genomics 2024; 12:44-46. doi:10.7150/jgen.92255 This volume Cite

Short Research Paper

Draft genome sequencing and assembly of Favolaschia claudopus CIRM-BRFM 2984 isolated from oak limbs

David Navarro^1,2✉, Elodie Drula^1,3, Delphine Chaduli^1,2, Robert Cazenave⁴, Steven Ahrendt⁵, Jie Wang⁵, Anna Lipzen⁵, Chris Daum⁵, Kerrie Barry⁵, Igor V. Grigoriev^5,6, Anne Favel^1,2, Marie-Noëlle Rosso¹, Francis Martin^7,8

1. INRAE, Aix Marseille Univ, UMR1163 Biodiversité et Biotechnologie Fongiques, 13288, Marseille, France.
2. CIRM-CF, INRAE, Aix Marseille Univ, UMR 1163, 13009, Marseille, France.
3. AFMB, CNRS, Aix Marseille Univ, UMR 7257, USC 1408, 13009, Marseille, France.
4. Association Mycologique de Bigorre, 65600, Séméac, France.
5. U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
6. Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA.
7. INRAE, Univ de Lorraine, UMR 1136 Interactions Arbres/Microorganismes, 54280, Champenoux, France.
8. Institute of Applied Mycology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China.

Citation:

Navarro D, Drula E, Chaduli D, Cazenave R, Ahrendt S, Wang J, Lipzen A, Daum C, Barry K, Grigoriev IV, Favel A, Rosso MN, Martin F. Draft genome sequencing and assembly of Favolaschia claudopus CIRM-BRFM 2984 isolated from oak limbs. J Genomics 2024; 12:44-46. doi:10.7150/jgen.92255. https://www.jgenomics.com/v12p0044.htm

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Abstract

Favolaschia claudopus, a wood-inhabiting basidiomycete of the Mycenaceae family, is considered an invasive species that has recently spread from Oceania to Europe. The CIRM-BRFM 2984 strain of this fungus was originally isolated from a basidiome collected from the fallen limb of a decayed oak tree in Southwest France. The genome sequence of this strain shared characteristics with other Mycenaceae species, including a large genome size and enriched content of protein-coding genes. The genome sequence provided here will facilitate further investigation on the factors that contribute to the successful global dissemination of F. claudopus.

Keywords: Favolaschia, genome, Mycenaceae, decayed wood, Agaricales, Invasive species

Citation styles

APA

Navarro, D., Drula, E., Chaduli, D., Cazenave, R., Ahrendt, S., Wang, J., Lipzen, A., Daum, C., Barry, K., Grigoriev, I.V., Favel, A., Rosso, M.N., Martin, F. (2024). Draft genome sequencing and assembly of Favolaschia claudopus CIRM-BRFM 2984 isolated from oak limbs. Journal of Genomics, 12, 44-46. https://doi.org/10.7150/jgen.92255.

ACS

Navarro, D.; Drula, E.; Chaduli, D.; Cazenave, R.; Ahrendt, S.; Wang, J.; Lipzen, A.; Daum, C.; Barry, K.; Grigoriev, I.V.; Favel, A.; Rosso, M.N.; Martin, F. Draft genome sequencing and assembly of Favolaschia claudopus CIRM-BRFM 2984 isolated from oak limbs. J. Genomics 2024, 12, 44-46. DOI: 10.7150/jgen.92255.

NLM

CSE

Navarro D, Drula E, Chaduli D, Cazenave R, Ahrendt S, Wang J, Lipzen A, Daum C, Barry K, Grigoriev IV, Favel A, Rosso MN, Martin F. 2024. Draft genome sequencing and assembly of Favolaschia claudopus CIRM-BRFM 2984 isolated from oak limbs. J Genomics. 12:44-46.

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