Genome Resource of Raspberry Root Rot Pathogen<i> Phytophthora gonapodyides</i>

Burlakoti, Rishi R.; Sapkota, Sanjib; Lubberts, Mark

doi:10.7150/jgen.94500

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J Genomics 2024; 12:55-57. doi:10.7150/jgen.94500 This volume Cite

Short Research Paper

Genome Resource of Raspberry Root Rot Pathogen Phytophthora gonapodyides

Rishi R. Burlakoti^1✉, Sanjib Sapkota^1,3, Mark Lubberts²

1. Science and Technology Branch, Agassiz Research and Development Centre, Agriculture and Agri-Food Canada, Agassiz, BC, Canada.
2. Science and Technology Branch, Summerland Research and Development Centre, Agriculture and Agri-Food Canada, Summerland, BC, Canada.
3. Abbotsford Agriculture Centre, Ministry of Agriculture and Food, Abbotsford, BC, Canada.

Citation:

Burlakoti RR, Sapkota S, Lubberts M. Genome Resource of Raspberry Root Rot Pathogen Phytophthora gonapodyides. J Genomics 2024; 12:55-57. doi:10.7150/jgen.94500. https://www.jgenomics.com/v12p0055.htm

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Abstract

Phytophthora gonapodyides is a newly reported oomycetes pathogen associated with root rot of red raspberry. We generated high-quality whole genome resource for P. gonapodyides, which was pathogenic on red raspberry. The genome size was 88,717,598 bp with a BUSCO completeness score of 93.9%. This genome resource provides insight on pathogen biology of Phytophthora spp. causing root rot of raspberry. To our best knowledge, this is the first complete genome assembly of plant pathogenic P. gonapodyides.

Keywords: Phytophthora gonapodyides, oomycete, Illumina Sequencing, red raspberry

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APA

Burlakoti, R.R., Sapkota, S., Lubberts, M. (2024). Genome Resource of Raspberry Root Rot Pathogen Phytophthora gonapodyides. Journal of Genomics, 12, 55-57. https://doi.org/10.7150/jgen.94500.

ACS

Burlakoti, R.R.; Sapkota, S.; Lubberts, M. Genome Resource of Raspberry Root Rot Pathogen Phytophthora gonapodyides. J. Genomics 2024, 12, 55-57. DOI: 10.7150/jgen.94500.

NLM

CSE

Burlakoti RR, Sapkota S, Lubberts M. 2024. Genome Resource of Raspberry Root Rot Pathogen Phytophthora gonapodyides. J Genomics. 12:55-57.

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