J Genomics 2020; 8:21-24. doi:10.7150/jgen.42020 This volume Cite

Short Research Paper

Draft genome sequence of Deinococcus sp. KR-1, a potential strain for palladium-leaching

Hironaga Akita1, Yuya Itoiri2, Akio Kumagai1, Noriyo Takeda1, Akinori Matsushika1,3, Mamoru Oshiki4, Zen-ichiro Kimura2,✉

1. Research Institute for Sustainable Chemistry, National Institute of Advanced Industrial Science and Technology (AIST), 3-11-32 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-0046, Japan
2. Department of Civil and Environmental Engineering, National Institute of Technology, Kure College, 2-2-11 Aga-minami, Kure, Hiroshima, 737-8506, Japan
3. Graduate School of Advanced Sciences of Matter, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-8530, Japan
4. Department of Civil Engineering, National Institute of Technology, Nagaoka College, Japan, 888, Nishi-Katagai, Nagaoka, Niigata 940-8532, Japan

Citation:
Akita H, Itoiri Y, Kumagai A, Takeda N, Matsushika A, Oshiki M, Kimura Zi. Draft genome sequence of Deinococcus sp. KR-1, a potential strain for palladium-leaching. J Genomics 2020; 8:21-24. doi:10.7150/jgen.42020. https://www.jgenomics.com/v08p0021.htm
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Abstract

Graphic abstract

Strain KR-1 was isolated from pond water collected in Japan. Because this strain was capable of adsorbing palladium particles in sterilized water, strain KR-1 will be a useful biocatalyst for palladium-leaching from metal waste. Here we present a draft genome sequence of Deinococcus sp. KR-1, which consists of a total of 7 contigs containing 4,556,772 bp with a GC content of 70.0% and comprises 4,450 predicted coding sequences. Based on the 16S rRNA gene sequence analysis, strain KR-1 was identified as Deinococcus sp. KR-1.

Keywords: Deinococcus, Palladium-leaching, Draft genome sequencing, 16S rRNA, Phylogenetic tree


Citation styles

APA
Akita, H., Itoiri, Y., Kumagai, A., Takeda, N., Matsushika, A., Oshiki, M., Kimura, Z.i. (2020). Draft genome sequence of Deinococcus sp. KR-1, a potential strain for palladium-leaching. Journal of Genomics, 8, 21-24. https://doi.org/10.7150/jgen.42020.

ACS
Akita, H.; Itoiri, Y.; Kumagai, A.; Takeda, N.; Matsushika, A.; Oshiki, M.; Kimura, Z.i. Draft genome sequence of Deinococcus sp. KR-1, a potential strain for palladium-leaching. J. Genomics 2020, 8, 21-24. DOI: 10.7150/jgen.42020.

NLM
Akita H, Itoiri Y, Kumagai A, Takeda N, Matsushika A, Oshiki M, Kimura Zi. Draft genome sequence of Deinococcus sp. KR-1, a potential strain for palladium-leaching. J Genomics 2020; 8:21-24. doi:10.7150/jgen.42020. https://www.jgenomics.com/v08p0021.htm

CSE
Akita H, Itoiri Y, Kumagai A, Takeda N, Matsushika A, Oshiki M, Kimura Zi. 2020. Draft genome sequence of Deinococcus sp. KR-1, a potential strain for palladium-leaching. J Genomics. 8:21-24.

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